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SUMMARY:PyCabinet: A Python Toolbox for End-to-End Transcriptomics and Omi
 cs Analysis - Ishita jain
DTSTART;TZID=Poland:20260721T152000
DTEND;TZID=Poland:20260721T154000
DTSTAMP:20260913T111051Z
UID:pretalx-euroscipy-2026-9UKDPK@pretalx.com
DESCRIPTION:Background\nModern genomic research increasingly relies on div
 erse computational analyses\, ranging from differential expression studies
  to single-cell and spatial transcriptomics. However\, laboratory scientis
 ts often encounter significant hurdles navigating scattered documentation
 \, heterogeneous tool ecosystems\, and inconsistent workflows across platf
 orms.\n\nObjective\nWe present PyCabinet\, a comprehensive Python-based an
 alysis platform designed to consolidate the fragmented genomics tool lands
 cape into a unified\, accessible framework. PyCabinet aims to provide a 
 “transcriptomics toolbox” that guides researchers seamlessly from raw 
 FASTQ files to publication-ready results.\n\nApproach\nPyCabinet offers:\n
 \nEnd-to-end workflow integration: A seamless progression from raw sequenc
 ing data to advanced downstream analyses.\n\nModular tool selection: Multi
 ple algorithmic options for each analysis step\, allowing researchers to s
 elect methods tailored to their data and scientific questions.\n\nComprehe
 nsive analysis coverage: Support for differential gene expression (DEG)\, 
 gene regulatory network (GRN) analysis using graph neural networks (GNNs)
 \, single-cell RNA-seq\, spatial transcriptomics\, and a continually expan
 ding set of analytical capabilities.\n\nUnified interface: Consistent Pyth
 on API and comprehensive documentation across all modules\, minimizing the
  learning curve and technical barriers for laboratory scientists.
LOCATION:Room 1.19 (Ground Floor\, Shannon)
URL:https://pretalx.com/euroscipy-2026/talk/9UKDPK/
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