BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//pretalx//pretalx.com//euroscipy-2026//speaker//RCQBPV
BEGIN:VTIMEZONE
TZID:CET
BEGIN:STANDARD
DTSTART:20001029T040000
RRULE:FREQ=YEARLY;BYDAY=-1SU;BYMONTH=10
TZNAME:CET
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
END:STANDARD
BEGIN:DAYLIGHT
DTSTART:20000326T030000
RRULE:FREQ=YEARLY;BYDAY=-1SU;BYMONTH=3
TZNAME:CEST
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
END:DAYLIGHT
END:VTIMEZONE
BEGIN:VEVENT
UID:pretalx-euroscipy-2026-9UKDPK@pretalx.com
DTSTART;TZID=CET:20260721T152000
DTEND;TZID=CET:20260721T154000
DESCRIPTION:Background\nModern genomic research increasingly relies on dive
 rse computational analyses\, ranging from differential expression studies 
 to single-cell and spatial transcriptomics. However\, laboratory scientist
 s often encounter significant hurdles navigating scattered documentation\,
  heterogeneous tool ecosystems\, and inconsistent workflows across platfor
 ms.\n\nObjective\nWe present PyCabinet\, a comprehensive Python-based anal
 ysis platform designed to consolidate the fragmented genomics tool landsca
 pe into a unified\, accessible framework. PyCabinet aims to provide a “t
 ranscriptomics toolbox” that guides researchers seamlessly from raw FAST
 Q files to publication-ready results.\n\nApproach\nPyCabinet offers:\n\nEn
 d-to-end workflow integration: A seamless progression from raw sequencing 
 data to advanced downstream analyses.\n\nModular tool selection: Multiple 
 algorithmic options for each analysis step\, allowing researchers to selec
 t methods tailored to their data and scientific questions.\n\nComprehensiv
 e analysis coverage: Support for differential gene expression (DEG)\, gene
  regulatory network (GRN) analysis using graph neural networks (GNNs)\, si
 ngle-cell RNA-seq\, spatial transcriptomics\, and a continually expanding 
 set of analytical capabilities.\n\nUnified interface: Consistent Python AP
 I and comprehensive documentation across all modules\, minimizing the lear
 ning curve and technical barriers for laboratory scientists.
DTSTAMP:20260603T191404Z
LOCATION:Room 1.19 (Ground Floor\, Shannon)
SUMMARY:PyCabinet: A Python Toolbox for End-to-End Transcriptomics and Omic
 s Analysis - Ishita jain
URL:https://pretalx.com/euroscipy-2026/talk/9UKDPK/
END:VEVENT
END:VCALENDAR